script to scan through a fasta file of miRNA sequences based on particular features

rebekka · #1 04-25-2012, 10:31 AM

Hi
i have two questions:
1.Is there a way of scanning through a fasta file of about 700 miRNA sequences and classify these sequences based on some features e.g. MFE and A:C mismatch ?

2. with the same fasta file above, how can i use python to read them one by one and assign them as input to RNAfold.exe and display the output result?

hope someone knows what am talking about.

rebekka · #2 04-28-2012, 02:38 PM

please,guys! i need your help. if my questions are not clear enough let me know

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script to scan through a fasta file of miRNA sequences based on particular features

script to scan through a fasta file of miRNA sequences based on particular features - RNA Forum

script to scan through a fasta file of miRNA sequences based on particular features - RNA Forum. Discuss RNA including mRNA structure and function, rRNA, tRNAs, and the biochemistry of other RNA molecules.